J4_6OGI_012

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAG*CAUAACG*CCAAAG*UGCC

Length

21 nucleotides

Bulged bases

6OGI|1|3|C|183, 6OGI|1|3|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OGI|1|3|G|141
6OGI|1|3|G|142
6OGI|1|3|A|143
6OGI|1|3|G|144
*
6OGI|1|3|C|178
6OGI|1|3|A|179
6OGI|1|3|U|180
6OGI|1|3|A|181
6OGI|1|3|A|182
6OGI|1|3|C|183
6OGI|1|3|G|184
*
6OGI|1|3|C|193
6OGI|1|3|C|194
6OGI|1|3|A|195
6OGI|1|3|A|196
6OGI|1|3|A|197
6OGI|1|3|G|198
*
6OGI|1|3|U|219
6OGI|1|3|G|220
6OGI|1|3|C|221
6OGI|1|3|C|222

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20