J4_6OGI_013
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAGC*GCCGUAAACGAUG*CCG
- Length
- 32 nucleotides
- Bulged bases
- 6OGI|1|3|A|572, 6OGI|1|3|C|576, 6OGI|1|3|A|815, 6OGI|1|3|C|817, 6OGI|1|3|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OGI|1|3|C|569
6OGI|1|3|G|570
6OGI|1|3|U|571
6OGI|1|3|A|572
6OGI|1|3|A|573
6OGI|1|3|A|574
6OGI|1|3|G|575
6OGI|1|3|C|576
6OGI|1|3|G|577
*
6OGI|1|3|C|764
6OGI|1|3|G|765
6OGI|1|3|A|766
6OGI|1|3|A|767
6OGI|1|3|A|768
6OGI|1|3|G|769
6OGI|1|3|C|770
*
6OGI|1|3|G|809
6OGI|1|3|C|810
6OGI|1|3|C|811
6OGI|1|3|G|812
6OGI|1|3|U|813
6OGI|1|3|A|814
6OGI|1|3|A|815
6OGI|1|3|A|816
6OGI|1|3|C|817
6OGI|1|3|G|818
6OGI|1|3|A|819
6OGI|1|3|U|820
6OGI|1|3|G|821
*
6OGI|1|3|C|879
6OGI|1|3|C|880
6OGI|1|3|G|881
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
- Chain Z
- 30S ribosomal protein S21
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