3D structure

PDB id
6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGUAAAGCG*CGAAAGC*GCCGUAAACGAUG*CCG
Length
32 nucleotides
Bulged bases
6OGI|1|3|A|572, 6OGI|1|3|C|576, 6OGI|1|3|A|815, 6OGI|1|3|C|817, 6OGI|1|3|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGI|1|3|C|569
6OGI|1|3|G|570
6OGI|1|3|U|571
6OGI|1|3|A|572
6OGI|1|3|A|573
6OGI|1|3|A|574
6OGI|1|3|G|575
6OGI|1|3|C|576
6OGI|1|3|G|577
*
6OGI|1|3|C|764
6OGI|1|3|G|765
6OGI|1|3|A|766
6OGI|1|3|A|767
6OGI|1|3|A|768
6OGI|1|3|G|769
6OGI|1|3|C|770
*
6OGI|1|3|G|809
6OGI|1|3|C|810
6OGI|1|3|C|811
6OGI|1|3|G|812
6OGI|1|3|U|813
6OGI|1|3|A|814
6OGI|1|3|A|815
6OGI|1|3|A|816
6OGI|1|3|C|817
6OGI|1|3|G|818
6OGI|1|3|A|819
6OGI|1|3|U|820
6OGI|1|3|G|821
*
6OGI|1|3|C|879
6OGI|1|3|C|880
6OGI|1|3|G|881

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain M
30S ribosomal protein S8
Chain Q
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17
Chain Z
30S ribosomal protein S21

Coloring options:

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