Loop J4_6OGI

3D structure

PDB id: 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CGGUGGAGC*GCUACAAUGGCGC*GCGUCGUAGUCCGGAUU*AUGAAGUCGGAAUCG
Length: 54 nucleotides
Bulged bases: 6OGI|1|3|U|1240, 6OGI|1|3|C|1302
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OGI|1|3|C|940
6OGI|1|3|G|941
6OGI|1|3|G|942
6OGI|1|3|U|943
6OGI|1|3|G|944
6OGI|1|3|G|945
6OGI|1|3|A|946
6OGI|1|3|G|947
6OGI|1|3|C|948
*
6OGI|1|3|G|1233
6OGI|1|3|C|1234
6OGI|1|3|U|1235
6OGI|1|3|A|1236
6OGI|1|3|C|1237
6OGI|1|3|A|1238
6OGI|1|3|A|1239
6OGI|1|3|U|1240
6OGI|1|3|G|1241
6OGI|1|3|G|1242
6OGI|1|3|C|1243
6OGI|1|3|G|1244
6OGI|1|3|C|1245
*
6OGI|1|3|G|1292
6OGI|1|3|C|1293
6OGI|1|3|G|1294
6OGI|1|3|U|1295
6OGI|1|3|C|1296
6OGI|1|3|G|1297
6OGI|1|3|U|1298
6OGI|1|3|A|1299
6OGI|1|3|G|1300
6OGI|1|3|U|1301
6OGI|1|3|C|1302
6OGI|1|3|C|1303
6OGI|1|3|G|1304
6OGI|1|3|G|1305
6OGI|1|3|A|1306
6OGI|1|3|U|1307
6OGI|1|3|U|1308
*
6OGI|1|3|A|1329
6OGI|1|3|U|1330
6OGI|1|3|G|1331
6OGI|1|3|A|1332
6OGI|1|3|A|1333
6OGI|1|3|G|1334
6OGI|1|3|U|1335
6OGI|1|3|C|1336
6OGI|1|3|G|1337
6OGI|1|3|G|1338
6OGI|1|3|A|1339
6OGI|1|3|A|1340
6OGI|1|3|U|1341
6OGI|1|3|C|1342
6OGI|1|3|G|1343

Current chains

Chain 3: 16S ribosomal RNA

Nearby chains

Chain 5: Transfer RNA; tRNA
Chain L: 30S ribosomal protein S7
Chain N: 30S ribosomal protein S9
Chain R: 30S ribosomal protein S13

J4_6OGI_014