J4_6OGI_015
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 6OGI|1|5|U|8, 6OGI|1|5|U|47, 6OGI|1|5|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OGI_015 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.2859
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OGI|1|5|G|7
6OGI|1|5|U|8
6OGI|1|5|G|9
6OGI|1|5|G|10
*
6OGI|1|5|C|25
6OGI|1|5|G|26
6OGI|1|5|U|27
6OGI|1|5|C|28
*
6OGI|1|5|G|42
6OGI|1|5|A|43
6OGI|1|5|A|44
6OGI|1|5|G|45
6OGI|1|5|G|46
6OGI|1|5|U|47
6OGI|1|5|C|48
6OGI|1|5|G|49
*
6OGI|1|5|C|65
6OGI|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L33
- Chain R
- 30S ribosomal protein S13
Coloring options: