J4_6OGI_021
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGGA*UACAAUG*CGUAGUCCGGAUU*AUGAAGUCGGAAU
- Length
- 38 nucleotides
- Bulged bases
- 6OGI|1|3|U|1240, 6OGI|1|3|C|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OGI|1|3|G|942
6OGI|1|3|U|943
6OGI|1|3|G|944
6OGI|1|3|G|945
6OGI|1|3|A|946
*
6OGI|1|3|U|1235
6OGI|1|3|A|1236
6OGI|1|3|C|1237
6OGI|1|3|A|1238
6OGI|1|3|A|1239
6OGI|1|3|U|1240
6OGI|1|3|G|1241
*
6OGI|1|3|C|1296
6OGI|1|3|G|1297
6OGI|1|3|U|1298
6OGI|1|3|A|1299
6OGI|1|3|G|1300
6OGI|1|3|U|1301
6OGI|1|3|C|1302
6OGI|1|3|C|1303
6OGI|1|3|G|1304
6OGI|1|3|G|1305
6OGI|1|3|A|1306
6OGI|1|3|U|1307
6OGI|1|3|U|1308
*
6OGI|1|3|A|1329
6OGI|1|3|U|1330
6OGI|1|3|G|1331
6OGI|1|3|A|1332
6OGI|1|3|A|1333
6OGI|1|3|G|1334
6OGI|1|3|U|1335
6OGI|1|3|C|1336
6OGI|1|3|G|1337
6OGI|1|3|G|1338
6OGI|1|3|A|1339
6OGI|1|3|A|1340
6OGI|1|3|U|1341
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
- Chain R
- 30S ribosomal protein S13
Coloring options: