J4_6OIG_007

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUG

Length

39 nucleotides

Bulged bases

6OIG|1|5|A|2281, 6OIG|1|5|C|2287, 6OIG|1|5|C|2306, 6OIG|1|5|U|2314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OIG|1|5|C|2192
6OIG|1|5|U|2193
6OIG|1|5|G|2194
*
6OIG|1|5|C|2248
6OIG|1|5|G|2249
*
6OIG|1|5|C|2267
6OIG|1|5|U|2268
6OIG|1|5|U|2269
6OIG|1|5|A|2270
6OIG|1|5|A|2271
6OIG|1|5|G|2272
6OIG|1|5|G|2273
6OIG|1|5|U|2274
6OIG|1|5|A|2275
6OIG|1|5|G|2276
6OIG|1|5|C|2277
6OIG|1|5|C|2278
6OIG|1|5|A|2279
6OIG|1|5|A|2280
6OIG|1|5|A|2281
6OIG|1|5|U|2282
6OIG|1|5|G|2283
6OIG|1|5|C|2284
6OIG|1|5|C|2285
6OIG|1|5|U|2286
6OIG|1|5|C|2287
6OIG|1|5|G|2288
*
6OIG|1|5|C|2304
6OIG|1|5|G|2305
6OIG|1|5|C|2306
6OIG|1|5|G|2307
6OIG|1|5|C|2308
6OIG|1|5|A|2309
6OIG|1|5|U|2310
6OIG|1|5|G|2311
6OIG|1|5|A|2312
6OIG|1|5|A|2313
6OIG|1|5|U|2314
6OIG|1|5|G|2315

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A