J4_6OJ2_005
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*CGC*GAGGUCA*UU
- Length
- 16 nucleotides
- Bulged bases
- 6OJ2|1|QW|U|8, 6OJ2|1|QW|U|47, 6OJ2|1|QW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OJ2_005 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.3374
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6OJ2|1|QW|A|7
6OJ2|1|QW|U|8
6OJ2|1|QW|A|9
6OJ2|1|QW|G|10
*
6OJ2|1|QW|C|25
6OJ2|1|QW|G|26
6OJ2|1|QW|C|27
*
6OJ2|1|QW|G|43
6OJ2|1|QW|A|44
6OJ2|1|QW|G|45
6OJ2|1|QW|G|46
6OJ2|1|QW|U|47
6OJ2|1|QW|C|48
6OJ2|1|QW|A|49
*
6OJ2|1|QW|U|65
6OJ2|1|QW|U|66
Current chains
- Chain QW
- E-site tRNAAla(GGC)
Nearby chains
- Chain QG
- 30S ribosomal protein S7
- Chain QK
- 30S ribosomal protein S11
- Chain R6
- 50S ribosomal protein L33
Coloring options: