J4_6OJ2_011

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

6OJ2|1|RA|A|1444|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OJ2_011 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.3193

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OJ2|1|RA|G|1444
6OJ2|1|RA|A|1444|||A
6OJ2|1|RA|C|1445
*
6OJ2|1|RA|G|1466
6OJ2|1|RA|C|1467
*
6OJ2|1|RA|G|1525
6OJ2|1|RA|G|1526
*
6OJ2|1|RA|C|1546
6OJ2|1|RA|C|1547

Current chains

Chain RA

23S rRNA

Nearby chains