J4_6OJ2_015

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OJ2_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1205

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6OJ2|1|RA|G|2643
6OJ2|1|RA|G|2644
6OJ2|1|RA|G|2645
6OJ2|1|RA|C|2646
*
6OJ2|1|RA|G|2674
6OJ2|1|RA|A|2675
6OJ2|1|RA|C|2676
*
6OJ2|1|RA|G|2731
6OJ2|1|RA|G|2732
6OJ2|1|RA|A|2733
6OJ2|1|RA|A|2734
6OJ2|1|RA|G|2735
*
6OJ2|1|RA|C|2769
6OJ2|1|RA|G|2770
6OJ2|1|RA|C|2771

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14