3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
6OJ2|1|YA|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OJ2_023 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0905
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6OJ2|1|YA|G|1310
6OJ2|1|YA|G|1311
6OJ2|1|YA|U|1312
6OJ2|1|YA|U|1313
6OJ2|1|YA|C|1314
*
6OJ2|1|YA|G|1338
6OJ2|1|YA|G|1339
6OJ2|1|YA|U|1340
6OJ2|1|YA|U|1341
6OJ2|1|YA|A|1342
6OJ2|1|YA|G|1343
*
6OJ2|1|YA|C|1404
6OJ2|1|YA|U|1405
*
6OJ2|1|YA|A|1597
6OJ2|1|YA|C|1598
6OJ2|1|YA|C|1599
6OJ2|1|YA|C|1600
6OJ2|1|YA|G|1601
6OJ2|1|YA|U|1602
6OJ2|1|YA|A|1603
6OJ2|1|YA|C|1604

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YX
50S ribosomal protein L23

Coloring options:


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