J4_6OLE_009
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OLE_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1028
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OLE|1|t|G|3605
6OLE|1|t|A|3606
6OLE|1|t|C|3607
6OLE|1|t|U|3608
6OLE|1|t|G|3609
*
6OLE|1|t|C|3621
6OLE|1|t|A|3622
6OLE|1|t|A|3623
6OLE|1|t|A|3624
6OLE|1|t|G|3625
*
6OLE|1|t|U|3661
6OLE|1|t|G|3662
6OLE|1|t|A|3663
6OLE|1|t|U|3664
6OLE|1|t|U|3665
*
6OLE|1|t|A|3792
6OLE|1|t|U|3793
6OLE|1|t|G|3794
6OLE|1|t|A|3795
6OLE|1|t|A|3796
6OLE|1|t|C|3797
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain o
- 60S ribosomal protein L41
- Chain q
- 60S ribosomal protein L37a
Coloring options: