J4_6OLF_005

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAUAU*AGGC*GCAUGUU*AG

Length

20 nucleotides

Bulged bases

6OLF|1|t|A|2345, 6OLF|1|t|U|2348, 6OLF|1|t|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLF|1|t|C|2344
6OLF|1|t|A|2345
6OLF|1|t|A|2346
6OLF|1|t|A|2347
6OLF|1|t|U|2348
6OLF|1|t|A|2349
6OLF|1|t|U|2350
*
6OLF|1|t|A|2368
6OLF|1|t|G|2369
6OLF|1|t|G|2370
6OLF|1|t|C|2371
*
6OLF|1|t|G|2802
6OLF|1|t|C|2803
6OLF|1|t|A|2804
6OLF|1|t|U|2805
6OLF|1|t|G|2806
6OLF|1|t|U|2807
6OLF|1|t|U|2808
*
6OLF|1|t|A|3827
6OLF|1|t|G|3828

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L17

Chain S

60S ribosomal protein L19

Chain e

60S ribosomal protein L31