J4_6OLG_002

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6OLG|1|A2|A|2345, 6OLG|1|A2|U|2348, 6OLG|1|A2|U|2805, 6OLG|1|A2|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|C|2344
6OLG|1|A2|A|2345
6OLG|1|A2|A|2346
6OLG|1|A2|A|2347
6OLG|1|A2|U|2348
6OLG|1|A2|A|2349
6OLG|1|A2|U|2350
*
6OLG|1|A2|A|2368
6OLG|1|A2|G|2369
6OLG|1|A2|G|2370
*
6OLG|1|A2|C|2803
6OLG|1|A2|A|2804
6OLG|1|A2|U|2805
6OLG|1|A2|G|2806
6OLG|1|A2|U|2807
6OLG|1|A2|U|2808
*
6OLG|1|A2|A|3827
6OLG|1|A2|G|3828

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L17

Chain AR

60S ribosomal protein L19

Chain Ad

60S ribosomal protein L31