J4_6OLG_012

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

6OLG|1|Bv|U|8, 6OLG|1|Bv|U|47, 6OLG|1|Bv|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OLG_012 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.221

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

6OLG|1|Bv|A|7
6OLG|1|Bv|U|8
6OLG|1|Bv|A|9
6OLG|1|Bv|G|10
*
6OLG|1|Bv|C|25
6OLG|1|Bv|A|26
6OLG|1|Bv|G|27
*
6OLG|1|Bv|C|43
6OLG|1|Bv|G|44
6OLG|1|Bv|U|45
6OLG|1|Bv|G|46
6OLG|1|Bv|U|47
6OLG|1|Bv|C|48
6OLG|1|Bv|C|49
*
6OLG|1|Bv|G|65
6OLG|1|Bv|U|66

Current chains

Chain Bv

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AI

60S ribosomal protein L10

Chain BZ

40S ribosomal protein S25