J4_6OLI_005

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6OLI|1|t|A|2345, 6OLI|1|t|U|2348, 6OLI|1|t|U|2805, 6OLI|1|t|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLI|1|t|C|2344
6OLI|1|t|A|2345
6OLI|1|t|A|2346
6OLI|1|t|A|2347
6OLI|1|t|U|2348
6OLI|1|t|A|2349
6OLI|1|t|U|2350
*
6OLI|1|t|A|2368
6OLI|1|t|G|2369
6OLI|1|t|G|2370
*
6OLI|1|t|C|2803
6OLI|1|t|A|2804
6OLI|1|t|U|2805
6OLI|1|t|G|2806
6OLI|1|t|U|2807
6OLI|1|t|U|2808
*
6OLI|1|t|A|3827
6OLI|1|t|G|3828

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L17

Chain S

60S ribosomal protein L19

Chain e

60S ribosomal protein L31