J4_6OM6_012

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6OM6|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OM6_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2285

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OM6|1|2|G|115
6OM6|1|2|A|116
6OM6|1|2|G|117
6OM6|1|2|U|118
6OM6|1|2|A|119
6OM6|1|2|A|120
6OM6|1|2|U|121
6OM6|1|2|G|122
*
6OM6|1|2|U|239
6OM6|1|2|G|240
*
6OM6|1|2|C|286
6OM6|1|2|U|287
6OM6|1|2|A|288
6OM6|1|2|G|289
*
6OM6|1|2|C|311
6OM6|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17