J4_6OM6_013

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6OM6|1|2|C|183, 6OM6|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OM6_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2092

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6OM6|1|2|G|142
6OM6|1|2|A|143
6OM6|1|2|G|144
*
6OM6|1|2|C|178
6OM6|1|2|A|179
6OM6|1|2|U|180
6OM6|1|2|A|181
6OM6|1|2|A|182
6OM6|1|2|C|183
6OM6|1|2|G|184
*
6OM6|1|2|C|193
6OM6|1|2|C|194
6OM6|1|2|A|195
6OM6|1|2|A|196
6OM6|1|2|A|197
6OM6|1|2|G|198
*
6OM6|1|2|U|219
6OM6|1|2|G|220
6OM6|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20