J4_6OM7_015
3D structure
- PDB id
- 6OM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 6OM7|1|u|U|8, 6OM7|1|u|U|47, 6OM7|1|u|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OM7_015 not in the Motif Atlas
- Homologous match to J4_7E8O_001
- Geometric discrepancy: 0.3789
- The information below is about J4_7E8O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OM7|1|u|A|7
6OM7|1|u|U|8
6OM7|1|u|A|9
6OM7|1|u|G|10
*
6OM7|1|u|C|25
6OM7|1|u|A|26
6OM7|1|u|G|27
6OM7|1|u|G|28
*
6OM7|1|u|C|42
6OM7|1|u|C|43
6OM7|1|u|G|44
6OM7|1|u|U|45
6OM7|1|u|G|46
6OM7|1|u|U|47
6OM7|1|u|C|48
6OM7|1|u|C|49
*
6OM7|1|u|G|65
6OM7|1|u|U|66
Current chains
- Chain u
- P/E site tRNA
Nearby chains
- Chain Se
- 40S ribosomal protein S30
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
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