J4_6OPE_006

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OPE|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OPE_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1148

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OPE|1|RA|C|268
6OPE|1|RA|U|269
*
6OPE|1|RA|G|370
6OPE|1|RA|A|371
6OPE|1|RA|G|372
6OPE|1|RA|U|373
6OPE|1|RA|A|374
6OPE|1|RA|C|375
*
6OPE|1|RA|G|399
6OPE|1|RA|G|400
6OPE|1|RA|A|401
6OPE|1|RA|A|402
6OPE|1|RA|U|403
6OPE|1|RA|C|404
6OPE|1|RA|U|405
6OPE|1|RA|G|406
*
6OPE|1|RA|U|421
6OPE|1|RA|A|422
6OPE|1|RA|A|423
6OPE|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9