J4_6OPE_024
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6OPE|1|YA|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OPE_024 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.0733
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6OPE|1|YA|G|1310
6OPE|1|YA|G|1311
6OPE|1|YA|U|1312
6OPE|1|YA|U|1313
6OPE|1|YA|C|1314
*
6OPE|1|YA|G|1338
6OPE|1|YA|G|1339
6OPE|1|YA|U|1340
6OPE|1|YA|U|1341
6OPE|1|YA|A|1342
6OPE|1|YA|G|1343
*
6OPE|1|YA|C|1404
6OPE|1|YA|U|1405
*
6OPE|1|YA|A|1597
6OPE|1|YA|C|1598
6OPE|1|YA|C|1599
6OPE|1|YA|C|1600
6OPE|1|YA|G|1601
6OPE|1|YA|U|1602
6OPE|1|YA|A|1603
6OPE|1|YA|C|1604
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
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