J4_6ORD_001

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6ORD|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORD_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0681

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ORD|1|QA|G|115
6ORD|1|QA|A|116
6ORD|1|QA|G|117
6ORD|1|QA|U|118
6ORD|1|QA|A|119
6ORD|1|QA|A|120
6ORD|1|QA|C|121
6ORD|1|QA|G|122
*
6ORD|1|QA|U|239
6ORD|1|QA|C|240
*
6ORD|1|QA|G|286
6ORD|1|QA|U|287
6ORD|1|QA|A|288
6ORD|1|QA|G|289
*
6ORD|1|QA|C|311
6ORD|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17