J4_6ORD_010

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

6ORD|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORD_010 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0688

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ORD|1|RA|U|1313
6ORD|1|RA|C|1314
*
6ORD|1|RA|G|1338
6ORD|1|RA|G|1339
6ORD|1|RA|U|1340
6ORD|1|RA|U|1341
6ORD|1|RA|A|1342
6ORD|1|RA|G|1343
*
6ORD|1|RA|C|1404
6ORD|1|RA|U|1405
*
6ORD|1|RA|A|1597
6ORD|1|RA|C|1598
6ORD|1|RA|C|1599
6ORD|1|RA|C|1600
6ORD|1|RA|G|1601
6ORD|1|RA|U|1602
6ORD|1|RA|A|1603

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23