J4_6ORD_019
3D structure
- PDB id
- 6ORD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6ORD|1|XV|U|8, 6ORD|1|XV|U|47, 6ORD|1|XV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ORD_019 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1319
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6ORD|1|XV|G|7
6ORD|1|XV|U|8
6ORD|1|XV|G|9
6ORD|1|XV|G|10
*
6ORD|1|XV|C|25
6ORD|1|XV|G|26
6ORD|1|XV|U|27
*
6ORD|1|XV|A|43
6ORD|1|XV|A|44
6ORD|1|XV|G|45
6ORD|1|XV|G|46
6ORD|1|XV|U|47
6ORD|1|XV|C|48
6ORD|1|XV|G|49
*
6ORD|1|XV|C|65
6ORD|1|XV|C|66
Current chains
- Chain XV
- P-site tRNAfMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XM
- 30S ribosomal protein S13
- Chain XY
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YQ
- 50S ribosomal protein L16
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