J4_6ORD_021

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6ORD|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORD_021 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0814

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ORD|1|YA|C|268
6ORD|1|YA|U|269
*
6ORD|1|YA|G|370
6ORD|1|YA|A|371
6ORD|1|YA|G|372
6ORD|1|YA|U|373
6ORD|1|YA|A|374
6ORD|1|YA|C|375
*
6ORD|1|YA|G|399
6ORD|1|YA|G|400
6ORD|1|YA|A|401
6ORD|1|YA|A|402
6ORD|1|YA|U|403
6ORD|1|YA|C|404
6ORD|1|YA|U|405
6ORD|1|YA|G|406
*
6ORD|1|YA|U|421
6ORD|1|YA|A|422
6ORD|1|YA|A|423
6ORD|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9