3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAUAAA*UC*GCGC*GG
Length
15 nucleotides
Bulged bases
6ORD|1|YA|G|1271, 6ORD|1|YA|A|1272, 6ORD|1|YA|U|1273, 6ORD|1|YA|A|1275, 6ORD|1|YA|G|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6ORD_023 not in the Motif Atlas
Homologous match to J4_9DFE_003
Geometric discrepancy: 0.0797
The information below is about J4_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6ORD|1|YA|C|1270
6ORD|1|YA|G|1271
6ORD|1|YA|A|1272
6ORD|1|YA|U|1273
6ORD|1|YA|A|1274
6ORD|1|YA|A|1275
6ORD|1|YA|A|1276
*
6ORD|1|YA|U|1294
6ORD|1|YA|C|1295
*
6ORD|1|YA|G|1645
6ORD|1|YA|C|1646
6ORD|1|YA|G|1647
6ORD|1|YA|C|1648
*
6ORD|1|YA|G|2009
6ORD|1|YA|G|2010

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YR
50S ribosomal protein L17
Chain YW
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.331 s