J4_6ORE_001

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ORE|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORE_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1166

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ORE|1|1|C|268
6ORE|1|1|C|269
*
6ORE|1|1|G|370
6ORE|1|1|A|371
6ORE|1|1|G|372
6ORE|1|1|U|373
6ORE|1|1|A|374
6ORE|1|1|G|375
*
6ORE|1|1|U|399
6ORE|1|1|G|400
6ORE|1|1|A|401
6ORE|1|1|A|402
6ORE|1|1|U|403
6ORE|1|1|A|404
6ORE|1|1|U|405
6ORE|1|1|G|406
*
6ORE|1|1|C|421
6ORE|1|1|A|422
6ORE|1|1|A|423
6ORE|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28