J4_6ORE_011

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6ORE|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORE_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1626

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ORE|1|2|G|115
6ORE|1|2|A|116
6ORE|1|2|G|117
6ORE|1|2|U|118
6ORE|1|2|A|119
6ORE|1|2|A|120
6ORE|1|2|U|121
6ORE|1|2|G|122
*
6ORE|1|2|U|239
6ORE|1|2|G|240
*
6ORE|1|2|C|286
6ORE|1|2|U|287
6ORE|1|2|A|288
6ORE|1|2|G|289
*
6ORE|1|2|C|311
6ORE|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17