J4_6ORL_001

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6ORL|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1975

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|C|268
6ORL|1|1|C|269
*
6ORL|1|1|G|370
6ORL|1|1|A|371
6ORL|1|1|G|372
6ORL|1|1|U|373
6ORL|1|1|A|374
6ORL|1|1|G|375
*
6ORL|1|1|U|399
6ORL|1|1|G|400
6ORL|1|1|A|401
6ORL|1|1|A|402
6ORL|1|1|U|403
6ORL|1|1|A|404
6ORL|1|1|U|405
6ORL|1|1|G|406
*
6ORL|1|1|C|421
6ORL|1|1|A|422
6ORL|1|1|A|423
6ORL|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28