J4_6ORL_012

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6ORL|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ORL_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2809

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ORL|1|2|G|115
6ORL|1|2|A|116
6ORL|1|2|G|117
6ORL|1|2|U|118
6ORL|1|2|A|119
6ORL|1|2|A|120
6ORL|1|2|U|121
6ORL|1|2|G|122
*
6ORL|1|2|U|239
6ORL|1|2|G|240
*
6ORL|1|2|C|286
6ORL|1|2|U|287
6ORL|1|2|A|288
6ORL|1|2|G|289
*
6ORL|1|2|C|311
6ORL|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17