J4_6OSI_021

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OSI|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSI_021 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1026

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OSI|1|YA|C|268
6OSI|1|YA|U|269
*
6OSI|1|YA|G|370
6OSI|1|YA|A|371
6OSI|1|YA|G|372
6OSI|1|YA|U|373
6OSI|1|YA|A|374
6OSI|1|YA|C|375
*
6OSI|1|YA|G|399
6OSI|1|YA|G|400
6OSI|1|YA|A|401
6OSI|1|YA|A|402
6OSI|1|YA|U|403
6OSI|1|YA|C|404
6OSI|1|YA|U|405
6OSI|1|YA|G|406
*
6OSI|1|YA|U|421
6OSI|1|YA|A|422
6OSI|1|YA|A|423
6OSI|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9