J4_6OSI_031

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

6OSI|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSI_031 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1758

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OSI|1|QA|G|115
6OSI|1|QA|A|116
6OSI|1|QA|G|117
6OSI|1|QA|U|118
6OSI|1|QA|A|119
6OSI|1|QA|A|120
6OSI|1|QA|C|121
6OSI|1|QA|G|122
*
6OSI|1|QA|U|239
6OSI|1|QA|C|240
*
6OSI|1|QA|G|286
6OSI|1|QA|U|287
6OSI|1|QA|A|288
6OSI|1|QA|G|289
*
6OSI|1|QA|C|311
6OSI|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17