J4_6OSK_001

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OSK|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSK_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1274

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OSK|1|1|C|268
6OSK|1|1|C|269
*
6OSK|1|1|G|370
6OSK|1|1|A|371
6OSK|1|1|G|372
6OSK|1|1|U|373
6OSK|1|1|A|374
6OSK|1|1|G|375
*
6OSK|1|1|U|399
6OSK|1|1|G|400
6OSK|1|1|A|401
6OSK|1|1|A|402
6OSK|1|1|U|403
6OSK|1|1|A|404
6OSK|1|1|U|405
6OSK|1|1|G|406
*
6OSK|1|1|C|421
6OSK|1|1|A|422
6OSK|1|1|A|423
6OSK|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28