J4_6OSK_012

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6OSK|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSK_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2031

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OSK|1|2|G|115
6OSK|1|2|A|116
6OSK|1|2|G|117
6OSK|1|2|U|118
6OSK|1|2|A|119
6OSK|1|2|A|120
6OSK|1|2|U|121
6OSK|1|2|G|122
*
6OSK|1|2|U|239
6OSK|1|2|G|240
*
6OSK|1|2|C|286
6OSK|1|2|U|287
6OSK|1|2|A|288
6OSK|1|2|G|289
*
6OSK|1|2|C|311
6OSK|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17