3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
6OSK|1|2|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OSK_012 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2031
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6OSK|1|2|G|115
6OSK|1|2|A|116
6OSK|1|2|G|117
6OSK|1|2|U|118
6OSK|1|2|A|119
6OSK|1|2|A|120
6OSK|1|2|U|121
6OSK|1|2|G|122
*
6OSK|1|2|U|239
6OSK|1|2|G|240
*
6OSK|1|2|C|286
6OSK|1|2|U|287
6OSK|1|2|A|288
6OSK|1|2|G|289
*
6OSK|1|2|C|311
6OSK|1|2|C|312

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain u
30S ribosomal protein S16
Chain v
30S ribosomal protein S17

Coloring options:


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