J4_6OSQ_001

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OSQ|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSQ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1536

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OSQ|1|1|C|268
6OSQ|1|1|C|269
*
6OSQ|1|1|G|370
6OSQ|1|1|A|371
6OSQ|1|1|G|372
6OSQ|1|1|U|373
6OSQ|1|1|A|374
6OSQ|1|1|G|375
*
6OSQ|1|1|U|399
6OSQ|1|1|G|400
6OSQ|1|1|A|401
6OSQ|1|1|A|402
6OSQ|1|1|U|403
6OSQ|1|1|A|404
6OSQ|1|1|U|405
6OSQ|1|1|G|406
*
6OSQ|1|1|C|421
6OSQ|1|1|A|422
6OSQ|1|1|A|423
6OSQ|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28