3D structure

PDB id
6OSQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated state bound Release complex 70S at long incubation time point
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6OSQ|1|1|G|1271, 6OSQ|1|1|A|1272, 6OSQ|1|1|U|1273, 6OSQ|1|1|A|1275, 6OSQ|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6OSQ_016 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1181
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6OSQ|1|1|C|1270
6OSQ|1|1|G|1271
6OSQ|1|1|A|1272
6OSQ|1|1|U|1273
6OSQ|1|1|A|1274
6OSQ|1|1|A|1275
6OSQ|1|1|A|1276
*
6OSQ|1|1|U|1294
6OSQ|1|1|C|1295
*
6OSQ|1|1|G|1645
6OSQ|1|1|C|1646
6OSQ|1|1|U|1647
6OSQ|1|1|U|1648
*
6OSQ|1|1|A|2009
6OSQ|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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