J4_6OSQ_023

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

6OSQ|1|2|C|183, 6OSQ|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OSQ_023 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1163

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6OSQ|1|2|G|142
6OSQ|1|2|A|143
6OSQ|1|2|G|144
*
6OSQ|1|2|C|178
6OSQ|1|2|A|179
6OSQ|1|2|U|180
6OSQ|1|2|A|181
6OSQ|1|2|A|182
6OSQ|1|2|C|183
6OSQ|1|2|G|184
*
6OSQ|1|2|C|193
6OSQ|1|2|C|194
6OSQ|1|2|A|195
6OSQ|1|2|A|196
6OSQ|1|2|A|197
6OSQ|1|2|G|198
*
6OSQ|1|2|U|219
6OSQ|1|2|G|220
6OSQ|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20