J4_6OST_002

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OST_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1087

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6OST|1|1|G|297
6OST|1|1|G|298
6OST|1|1|A|299
6OST|1|1|A|300
6OST|1|1|G|301
*
6OST|1|1|C|316
6OST|1|1|G|317
6OST|1|1|C|318
6OST|1|1|G|319
*
6OST|1|1|C|323
6OST|1|1|A|324
6OST|1|1|G|325
*
6OST|1|1|C|337
6OST|1|1|G|338
6OST|1|1|U|339
6OST|1|1|A|340
6OST|1|1|C|341

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24