J4_6OT3_001

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6OT3|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OT3_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2493

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6OT3|1|1|C|268
6OT3|1|1|C|269
*
6OT3|1|1|G|370
6OT3|1|1|A|371
6OT3|1|1|G|372
6OT3|1|1|U|373
6OT3|1|1|A|374
6OT3|1|1|G|375
*
6OT3|1|1|U|399
6OT3|1|1|G|400
6OT3|1|1|A|401
6OT3|1|1|A|402
6OT3|1|1|U|403
6OT3|1|1|A|404
6OT3|1|1|U|405
6OT3|1|1|G|406
*
6OT3|1|1|C|421
6OT3|1|1|A|422
6OT3|1|1|A|423
6OT3|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28