J4_6OTR_006

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

6OTR|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OTR_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1432

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6OTR|1|RA|C|268
6OTR|1|RA|U|269
*
6OTR|1|RA|G|370
6OTR|1|RA|A|371
6OTR|1|RA|G|372
6OTR|1|RA|U|373
6OTR|1|RA|A|374
6OTR|1|RA|C|375
*
6OTR|1|RA|G|399
6OTR|1|RA|G|400
6OTR|1|RA|A|401
6OTR|1|RA|A|402
6OTR|1|RA|U|403
6OTR|1|RA|C|404
6OTR|1|RA|U|405
6OTR|1|RA|G|406
*
6OTR|1|RA|U|421
6OTR|1|RA|A|422
6OTR|1|RA|A|423
6OTR|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9