J4_6OUO_006

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6OUO|1|1|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OUO_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0897

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OUO|1|1|U|1313
6OUO|1|1|C|1314
*
6OUO|1|1|G|1338
6OUO|1|1|G|1339
6OUO|1|1|U|1340
6OUO|1|1|G|1341
6OUO|1|1|A|1342
6OUO|1|1|G|1343
*
6OUO|1|1|C|1404
6OUO|1|1|U|1405
*
6OUO|1|1|A|1597
6OUO|1|1|A|1598
6OUO|1|1|U|1599
6OUO|1|1|C|1600
6OUO|1|1|G|1601
6OUO|1|1|U|1602
6OUO|1|1|A|1603

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23