J4_6OUO_012

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6OUO|1|2|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OUO_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2553

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6OUO|1|2|G|115
6OUO|1|2|A|116
6OUO|1|2|G|117
6OUO|1|2|U|118
6OUO|1|2|A|119
6OUO|1|2|A|120
6OUO|1|2|U|121
6OUO|1|2|G|122
*
6OUO|1|2|U|239
6OUO|1|2|G|240
*
6OUO|1|2|C|286
6OUO|1|2|U|287
6OUO|1|2|A|288
6OUO|1|2|G|289
*
6OUO|1|2|C|311
6OUO|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17