J4_6OXA_009

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6OXA|1|RA|U|1341, 6OXA|1|RA|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_009 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1213

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6OXA|1|RA|G|1310
6OXA|1|RA|G|1311
6OXA|1|RA|U|1312
6OXA|1|RA|U|1313
6OXA|1|RA|C|1314
*
6OXA|1|RA|G|1338
6OXA|1|RA|G|1339
6OXA|1|RA|U|1340
6OXA|1|RA|U|1341
6OXA|1|RA|A|1342
6OXA|1|RA|G|1343
*
6OXA|1|RA|C|1404
6OXA|1|RA|U|1405
*
6OXA|1|RA|A|1597
6OXA|1|RA|C|1598
6OXA|1|RA|C|1599
6OXA|1|RA|C|1600
6OXA|1|RA|G|1601
6OXA|1|RA|U|1602
6OXA|1|RA|A|1603
6OXA|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23