J4_6OXA_015

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6OXA_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1217

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6OXA|1|RA|G|2643
6OXA|1|RA|G|2644
6OXA|1|RA|G|2645
6OXA|1|RA|C|2646
*
6OXA|1|RA|G|2674
6OXA|1|RA|A|2675
6OXA|1|RA|C|2676
*
6OXA|1|RA|G|2731
6OXA|1|RA|G|2732
6OXA|1|RA|A|2733
6OXA|1|RA|A|2734
6OXA|1|RA|G|2735
*
6OXA|1|RA|C|2769
6OXA|1|RA|G|2770
6OXA|1|RA|C|2771

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14