J4_6OXI_020
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OXI_020 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0954
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OXI|1|YA|C|297
6OXI|1|YA|G|298
6OXI|1|YA|A|299
6OXI|1|YA|A|300
6OXI|1|YA|G|301
*
6OXI|1|YA|C|316
6OXI|1|YA|G|317
6OXI|1|YA|C|318
6OXI|1|YA|C|319
*
6OXI|1|YA|G|323
6OXI|1|YA|A|324
6OXI|1|YA|G|325
*
6OXI|1|YA|C|337
6OXI|1|YA|G|338
6OXI|1|YA|U|339
6OXI|1|YA|A|340
6OXI|1|YA|G|341
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YY
- 50S ribosomal protein L24
Coloring options: