J4_6OXI_022
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*ACCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6OXI|1|YA|U|1341, 6OXI|1|YA|A|1342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6OXI_022 not in the Motif Atlas
- Homologous match to J4_9DFE_004
- Geometric discrepancy: 0.1071
- The information below is about J4_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6OXI|1|YA|G|1310
6OXI|1|YA|G|1311
6OXI|1|YA|U|1312
6OXI|1|YA|U|1313
6OXI|1|YA|C|1314
*
6OXI|1|YA|G|1338
6OXI|1|YA|G|1339
6OXI|1|YA|U|1340
6OXI|1|YA|U|1341
6OXI|1|YA|A|1342
6OXI|1|YA|G|1343
*
6OXI|1|YA|C|1404
6OXI|1|YA|U|1405
*
6OXI|1|YA|A|1597
6OXI|1|YA|C|1598
6OXI|1|YA|C|1599
6OXI|1|YA|C|1600
6OXI|1|YA|G|1601
6OXI|1|YA|U|1602
6OXI|1|YA|A|1603
6OXI|1|YA|C|1604
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
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