J4_6P5J_001

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAACAAUAC*GUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAU*AUAG

Length

65 nucleotides

Bulged bases

6P5J|1|2|A|555, 6P5J|1|2|G|588, 6P5J|1|2|G|589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|C|30
6P5J|1|2|U|31
6P5J|1|2|U|32
6P5J|1|2|G|33
6P5J|1|2|U|34
*
6P5J|1|2|A|521
6P5J|1|2|A|522
6P5J|1|2|A|523
6P5J|1|2|U|524
6P5J|1|2|A|525
6P5J|1|2|A|526
6P5J|1|2|C|527
6P5J|1|2|A|528
6P5J|1|2|A|529
6P5J|1|2|U|530
6P5J|1|2|A|531
6P5J|1|2|C|532
*
6P5J|1|2|G|552
6P5J|1|2|U|553
6P5J|1|2|A|554
6P5J|1|2|A|555
6P5J|1|2|U|556
6P5J|1|2|U|557
6P5J|1|2|G|558
6P5J|1|2|G|559
6P5J|1|2|A|560
6P5J|1|2|A|561
6P5J|1|2|U|562
6P5J|1|2|G|563
6P5J|1|2|A|564
6P5J|1|2|G|565
6P5J|1|2|U|566
6P5J|1|2|C|567
6P5J|1|2|C|568
6P5J|1|2|A|569
6P5J|1|2|C|570
6P5J|1|2|U|571
6P5J|1|2|U|572
6P5J|1|2|U|573
6P5J|1|2|A|574
6P5J|1|2|A|575
6P5J|1|2|A|576
6P5J|1|2|U|577
6P5J|1|2|C|578
6P5J|1|2|C|579
6P5J|1|2|U|580
6P5J|1|2|U|581
6P5J|1|2|U|582
6P5J|1|2|A|583
6P5J|1|2|A|584
6P5J|1|2|C|585
6P5J|1|2|G|586
6P5J|1|2|A|587
6P5J|1|2|G|588
6P5J|1|2|G|589
6P5J|1|2|A|590
6P5J|1|2|U|591
6P5J|1|2|C|592
6P5J|1|2|C|593
6P5J|1|2|A|594
6P5J|1|2|U|595
*
6P5J|1|2|A|641
6P5J|1|2|U|642
6P5J|1|2|A|643
6P5J|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain Z

eS24

Chain f

eS30