J4_6P5J_002

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGC*GAG*CACAU*AAGGCAG

Length

59 nucleotides

Bulged bases

6P5J|1|2|U|55, 6P5J|1|2|C|58, 6P5J|1|2|A|60, 6P5J|1|2|A|61, 6P5J|1|2|C|65, 6P5J|1|2|C|67, 6P5J|1|2|C|73, 6P5J|1|2|G|74, 6P5J|1|2|G|75, 6P5J|1|2|U|76, 6P5J|1|2|A|92, 6P5J|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|C|53
6P5J|1|2|A|54
6P5J|1|2|U|55
6P5J|1|2|G|56
6P5J|1|2|U|57
6P5J|1|2|C|58
6P5J|1|2|U|59
6P5J|1|2|A|60
6P5J|1|2|A|61
6P5J|1|2|G|62
6P5J|1|2|U|63
6P5J|1|2|A|64
6P5J|1|2|C|65
6P5J|1|2|G|66
6P5J|1|2|C|67
6P5J|1|2|A|68
6P5J|1|2|C|69
6P5J|1|2|G|70
6P5J|1|2|G|71
6P5J|1|2|C|72
6P5J|1|2|C|73
6P5J|1|2|G|74
6P5J|1|2|G|75
6P5J|1|2|U|76
6P5J|1|2|A|77
6P5J|1|2|C|78
6P5J|1|2|A|79
6P5J|1|2|G|80
6P5J|1|2|U|81
6P5J|1|2|G|82
6P5J|1|2|A|83
6P5J|1|2|A|84
6P5J|1|2|A|85
6P5J|1|2|C|86
6P5J|1|2|U|87
6P5J|1|2|G|88
6P5J|1|2|C|89
6P5J|1|2|G|90
6P5J|1|2|A|91
6P5J|1|2|A|92
6P5J|1|2|U|93
6P5J|1|2|G|94
6P5J|1|2|G|95
6P5J|1|2|C|96
*
6P5J|1|2|G|434
6P5J|1|2|A|435
6P5J|1|2|G|436
*
6P5J|1|2|C|457
6P5J|1|2|A|458
6P5J|1|2|C|459
6P5J|1|2|A|460
6P5J|1|2|U|461
*
6P5J|1|2|A|468
6P5J|1|2|A|469
6P5J|1|2|G|470
6P5J|1|2|G|471
6P5J|1|2|C|472
6P5J|1|2|A|473
6P5J|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AV

uL14

Chain AW

eL24

Chain F

eS4

Chain H

eS6

Chain J

eS8

Chain K

uS4

Chain Z

eS24