J4_6P5J_006

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6P5J|1|5|C|216, 6P5J|1|5|C|217, 6P5J|1|5|A|218, 6P5J|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|C|196
6P5J|1|5|A|197
6P5J|1|5|A|198
6P5J|1|5|G|199
*
6P5J|1|5|C|215
6P5J|1|5|C|216
6P5J|1|5|C|217
6P5J|1|5|A|218
6P5J|1|5|G|219
6P5J|1|5|C|220
6P5J|1|5|C|221
6P5J|1|5|C|222
*
6P5J|1|5|G|226
6P5J|1|5|A|227
6P5J|1|5|C|228
*
6P5J|1|5|G|240
6P5J|1|5|G|241
6P5J|1|5|U|242
6P5J|1|5|A|243
6P5J|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AY

uL24