J4_6P5J_014
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6P5J|1|5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6P5J_014 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1933
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|C|4231
6P5J|1|5|U|4232
6P5J|1|5|A|4233
6P5J|1|5|A|4234
6P5J|1|5|G|4235
*
6P5J|1|5|U|4289
6P5J|1|5|U|4290
6P5J|1|5|G|4291
6P5J|1|5|A|4292
6P5J|1|5|U|4293
*
6P5J|1|5|A|4317
6P5J|1|5|C|4318
6P5J|1|5|C|4319
*
6P5J|1|5|G|4328
6P5J|1|5|G|4329
6P5J|1|5|G|4330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AD
- uL18
- Chain AT
- eL21
- Chain Ab
- eL29
- Chain Ao
- eL42
Coloring options: