J4_6P5K_001

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAU*AUAG

Length

54 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|C|30
6P5K|1|2|U|31
6P5K|1|2|U|32
6P5K|1|2|G|33
6P5K|1|2|U|34
*
6P5K|1|2|A|521
6P5K|1|2|A|522
6P5K|1|2|A|523
6P5K|1|2|U|524
6P5K|1|2|A|525
6P5K|1|2|A|526
6P5K|1|2|C|527
*
6P5K|1|2|G|558
6P5K|1|2|G|559
6P5K|1|2|A|560
6P5K|1|2|A|561
6P5K|1|2|U|562
6P5K|1|2|G|563
6P5K|1|2|A|564
6P5K|1|2|G|565
6P5K|1|2|U|566
6P5K|1|2|C|567
6P5K|1|2|C|568
6P5K|1|2|A|569
6P5K|1|2|C|570
6P5K|1|2|U|571
6P5K|1|2|U|572
6P5K|1|2|U|573
6P5K|1|2|A|574
6P5K|1|2|A|575
6P5K|1|2|A|576
6P5K|1|2|U|577
6P5K|1|2|C|578
6P5K|1|2|C|579
6P5K|1|2|U|580
6P5K|1|2|U|581
6P5K|1|2|U|582
6P5K|1|2|A|583
6P5K|1|2|A|584
6P5K|1|2|C|585
6P5K|1|2|G|586
6P5K|1|2|A|587
6P5K|1|2|G|588
6P5K|1|2|G|589
6P5K|1|2|A|590
6P5K|1|2|U|591
6P5K|1|2|C|592
6P5K|1|2|C|593
6P5K|1|2|A|594
6P5K|1|2|U|595
*
6P5K|1|2|A|641
6P5K|1|2|U|642
6P5K|1|2|A|643
6P5K|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Y

uS12

Chain Z

eS24

Chain f

eS30